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Virome Methodology in Animal Diseases

Year 2020, Volume: 10, 67 - 70, 31.12.2020

Abstract

Virus discovery is a novel and ascending field in science for the last decade. This field is important because of changing host interactions and novel viruses in animals is necessary both for understanding the origin of different virus species that can infect human hosts and for preventing new zoonotic infections. The COVID-19 discovery was shown all around the world, viruses can easily adopt other hosts. The goal of this presentation is to explain the state-of-the-art in virome studies in various animals and in different specimens with different methodologies such as next-generation sequencing with different taqmentation reagents and analyses total raw data in different pipeline. Specifically Chaphamaparvoviruses which belongs to Parvoviridae family have recently been detected in dogs, cats, pigs, rats, red-crowned cranes, turkeys and chickens, macaques, bats, Tasmanian devils, murine and fish. Another chaphamaparvovirus was recently found in the serum of a febrile Brazilian. Some chaphamaparvovirus members have been shown to cause nephropathy in laboratory mice and in tilapia fish. As a result virus discovery has important role in animal and human science and to learn methods in this area give privilege to researchers as well as countries, which may eventually become the epicenter of a new and unpredicted novel virus someday.

References

  • Chan, J.F., Sridhar, S, Yip, C.C., Lau, S.K., Woo, P.C. (2017). The role of laboratory diagnostics in emerging viral infections: the example of the Middle East respiratory syndrome epidemic. J. Microbiol. 55(3):172-82.
  • Deng, X., Naccache, S. N., Ng, T., Federman, S., Li, L., Chiu, C. Y., & Delwart, E. L. (2015). An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic acids research, 43(7), e46-e46.
  • Feng, K., Costa, J., & Edwards, J.S. (2018). Next-generation sequencing library construction on a surface. BMC Genomics, 19(1):416.
  • Gorbalenya, A. E., Lauber, C. & Siddell, S. (2019). Taxonomy of Viruses. Virus Taxonomy and Computational Virology: Experts vs Algorithms. Reference Module in Biomedical Sciences. Elsevier https://doi.org/10.1016/B978-0-12-801238-3.99237-7.
  • Huang, C, Wang, Y, Li, X, Ren, L, Zhao, J, Hu, Y., et al. (2020). Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet, 395(10223):497-506.
  • Le, S.Q., Gascuel, O. (2008). An improved general amino acid replacement matrix. Mol Biol Evol., 25(7):1307-20.
  • Li, L, Deng, X, Mee, E.T, Collot-Teixeira, S, Anderson, R., Schepelmann, S., et al. (2015). Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent. J Virol Methods. 213, 139-46.
  • Tamura, K, Stecher, G, Peterson, D, Filipski, A, Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol.30(12):2725-9.
Year 2020, Volume: 10, 67 - 70, 31.12.2020

Abstract

References

  • Chan, J.F., Sridhar, S, Yip, C.C., Lau, S.K., Woo, P.C. (2017). The role of laboratory diagnostics in emerging viral infections: the example of the Middle East respiratory syndrome epidemic. J. Microbiol. 55(3):172-82.
  • Deng, X., Naccache, S. N., Ng, T., Federman, S., Li, L., Chiu, C. Y., & Delwart, E. L. (2015). An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic acids research, 43(7), e46-e46.
  • Feng, K., Costa, J., & Edwards, J.S. (2018). Next-generation sequencing library construction on a surface. BMC Genomics, 19(1):416.
  • Gorbalenya, A. E., Lauber, C. & Siddell, S. (2019). Taxonomy of Viruses. Virus Taxonomy and Computational Virology: Experts vs Algorithms. Reference Module in Biomedical Sciences. Elsevier https://doi.org/10.1016/B978-0-12-801238-3.99237-7.
  • Huang, C, Wang, Y, Li, X, Ren, L, Zhao, J, Hu, Y., et al. (2020). Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet, 395(10223):497-506.
  • Le, S.Q., Gascuel, O. (2008). An improved general amino acid replacement matrix. Mol Biol Evol., 25(7):1307-20.
  • Li, L, Deng, X, Mee, E.T, Collot-Teixeira, S, Anderson, R., Schepelmann, S., et al. (2015). Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent. J Virol Methods. 213, 139-46.
  • Tamura, K, Stecher, G, Peterson, D, Filipski, A, Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol.30(12):2725-9.
There are 8 citations in total.

Details

Primary Language English
Subjects Engineering
Journal Section Articles
Authors

Eda Altan

Publication Date December 31, 2020
Published in Issue Year 2020Volume: 10

Cite

APA Altan, E. (2020). Virome Methodology in Animal Diseases. The Eurasia Proceedings of Science Technology Engineering and Mathematics, 10, 67-70.